Basic Information
Locus ID:
AsparagusV1_07.2106.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 72938505 | 72950961 | - | AsparagusV1_07.2106.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 98,160.32 Da | 48.06 | 84.23 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 53 | 205 | 5.55298E-47 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 811 | 852 | 3.98414E-23 | - |
| Pfam | PF00069 | Protein kinase domain | 527 | 779 | 2.2E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 807 | 877 | 1.1E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 807 | 877 | 5.74E-24 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 63 | 178 | 6.7E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 504 | 781 | 2.56E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 805 | 878 | 2.9E-28 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 510 | 598 | 1.7E-28 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 41 | 187 | 2.1E-6 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 599 | 801 | 4.0E-44 | - |
| SMART | SM00504 | Ubox_2 | 810 | 873 | 1.0E-27 | IPR003613 |
| SMART | SM00220 | serkin_6 | 526 | 792 | 2.4E-34 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 806 | 878 | 35.446487 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 526 | 792 | 33.827621 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 644 | 656 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 532 | 553 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 321 | - | - |
| Coils | Coil | Coil | 30 | 50 | - | - |
| Coils | Coil | Coil | 359 | 386 | - | - |
| Coils | Coil | Coil | 411 | 501 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_020274864.1 | U-box domain-containing protein 33-like [Asparagus officinalis] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1EDP0 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F21060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology