Basic Information
Locus ID:
AsparagusV1_07.2081.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 72170867 | 72171481 | + | AsparagusV1_07.2081.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.06 | 22,691.77 Da | 53.04 | 79.41 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 37 | 82 | 3.40769E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 39 | 80 | 3.2E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 93 | 4.78E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 94 | 1.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 39 | 80 | 5.2E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 39 | 81 | 13.094151 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 54 | 63 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020276285.1 | E3 ubiquitin-protein ligase RMA3-like [Asparagus officinalis] | 0 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EDX6 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F20810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology