Basic Information
Locus ID:
AsparagusV1_07.2062.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 71208798 | 71223876 | - | AsparagusV1_07.2062.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 41,741.30 Da | 52.24 | 57.48 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 309 | 349 | 1.00238E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 308 | 354 | 4.8E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 309 | 355 | 6.31E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 359 | 3.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 310 | 348 | 1.8E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 6 | 60 | 1000.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 248 | 360 | 1.5E-9 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 310 | 349 | 11.250026 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 37 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020240798.1 | probable E3 ubiquitin-protein ligase LOG2 [Asparagus officinalis] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EDQ5 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F20620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology