Basic Information
Locus ID:
AsparagusV1_07.1976.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 68199742 | 68211503 | - | AsparagusV1_07.1976.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 87,236.53 Da | 46.54 | 70.46 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 517 | 802 | 1.9594E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 768 | 802 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 562 | 595 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 686 | 719 | 1.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 602 | 639 | 9.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 524 | 553 | 0.18 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.8E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 515 | 802 | 2.24E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 649 | 802 | 2.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 365 | 648 | 7.0E-33 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 681 | 719 | 2.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 599 | 639 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 722 | 761 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 642 | 678 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 553 | 9.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 595 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 763 | 802 | 6.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 770 | 802 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 606 | 648 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 770 | 802 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 606 | 641 | 9.520146 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.247652 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 688 | 728 | 9.639578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 562 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 563 | 595 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 563 | 595 | 9.968326 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 626 | 640 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 423 | - | - |
| Coils | Coil | Coil | 376 | 396 | - | - |
| Coils | Coil | Coil | 79 | 111 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_020275819.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X4 [Asparagus officinalis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EDB6 | LisH domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F19760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology