Basic Information
Locus ID:
AsparagusV1_07.194.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Putative zinc finger in N-recognin (UBR box)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4654016 | 4685798 | + | AsparagusV1_07.194.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 263,157.66 Da | 47.16 | 87.69 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2045 | 2323 | 1.37792E-52 | - |
| CDD | cd16482 | RING-H2_UBR1_like | 1416 | 1476 | 5.30841E-24 | - |
| Pfam | PF02207 | Putative zinc finger in N-recognin (UBR box) | 129 | 195 | 2.1E-19 | IPR003126 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2107 | 2144 | 5.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2288 | 2322 | 5.5E-5 | IPR001680 |
| Pfam | PF18995 | Proteolysis_6 C-terminal | 1561 | 2008 | 1.7E-92 | IPR044046 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2240 | 2281 | 5.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2149 | 2185 | 0.04 | IPR001680 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 862 | 948 | 3.54E-6 | IPR036390 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2032 | 2326 | 6.41E-66 | IPR036322 |
| Gene3D | G3DSA:2.10.110.30 | - | 129 | 197 | 1.6E-23 | - |
| Gene3D | G3DSA:1.10.10.2670 | - | 858 | 949 | 7.8E-7 | IPR042065 |
| Gene3D | G3DSA:2.130.10.10 | - | 2043 | 2348 | 2.1E-100 | IPR015943 |
| SMART | SM00396 | push_1 | 127 | 196 | 2.2E-22 | IPR003126 |
| SMART | SM00320 | WD40_4 | 2147 | 2185 | 8.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2105 | 2144 | 4.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2284 | 2323 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2188 | 2228 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2062 | 2100 | 0.82 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2238 | 2281 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2015 | 2059 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1532 | 1572 | 460.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2112 | 2153 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2291 | 2328 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2153 | 2194 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2112 | 2146 | 12.393768 | - |
| ProSiteProfiles | PS51157 | Zinc finger UBR-type profile. | 127 | 197 | 10.668234 | IPR003126 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2245 | 2290 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2046 | 2068 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2153 | 2186 | 8.861059 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2245 | 2283 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2291 | 2332 | 13.649761 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 2131 | 2145 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 2268 | 2282 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 2172 | 2186 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 2268 | 2282 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 2310 | 2324 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 2131 | 2145 | 5.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1249 | 1272 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02310.1 | proteolysis 6. Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | 0 |
| RefSeq | XP_020273460.1 | E3 ubiquitin-protein ligase PRT6 [Asparagus officinalis] | 0 |
| F4KCC2 | E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana OX=3702 GN=PRT6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1E940 | E3 ubiquitin-protein ligase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F1940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32551, jg32552 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15473 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037944 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205650 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg51062, Sbi_jg51063, Sbi_jg60136 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24314 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00015831, GOSA_00015832 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78415, Sgl80918, Sgl80924 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017294, gene:ENSEOMG00000039439 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.9AG0004040, CQ.Regalona.r1.9BG0018160 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30270610 |
| Apiaceae | Apium graveolens | 1 | AgUnG01069 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G015980, COCNU_16G007970 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703591, gene-LOC103721993, gene-LOC120109804 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.194.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G10760, Ftri15G27234 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G02310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012411m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40140.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g057730.2N, BniB04g005100.2N, BniB08g000620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1156 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1186 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g17950, gene.Cymno05g19270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0255s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g34130, gene.Thate01g34140, gene.Thate01g34150 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1232 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002310, Pov_00002312, Pov_00003358 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10666, Lb2G10667 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.671, BH02.674, CH02.772 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0009690, gene-QOZ80_1BG0058290 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0230290.2, HORVU.MOREX.r3.3HG0230560.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030129, gene-QYE76_048573 |
| Poaceae | Oryza coarctata | 2 | Oco01G001910, Oco02G001900 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g05500.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G065000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205838 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G023500, Chr03G004310, Chr05G014380, Chr08G000830 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G132200, Tel3E01G133400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG008510, gene_TRIDC3AG008660 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G072400.2, TraesCS3A02G073400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb124390_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13023 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7602 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.297, evm.TU.LG26.748 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g39430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.749 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4435 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9887 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9480 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.1093 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006026 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12705 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5968, nbisL1-mrna-5969 |
| Salicaceae | Populus euphratica | 1 | populus_peu11296 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607049, gene-LOC132630356 |
| Solanaceae | Solanum chilense | 2 | SOLCI002180800, SOLCI002988400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002081, gene-LOC107031080 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_5654, gene_6817, gene_6818 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0466 |
| Zosteraceae | Zostera marina | 1 | Zosma01g25280.v3.1 |