Basic Information
Locus ID:
AsparagusV1_07.1917.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 66337024 | 66345209 | - | AsparagusV1_07.1917.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 120,729.73 Da | 47.92 | 71.05 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 169 | 264 | 3.47985E-43 | - |
| CDD | cd13999 | STKc_MAP3K-like | 813 | 1070 | 1.20837E-111 | - |
| Pfam | PF00564 | PB1 domain | 182 | 265 | 4.2E-19 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 809 | 1070 | 9.5E-63 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 182 | 274 | 6.13E-21 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 798 | 1069 | 3.46E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 895 | 1084 | 7.5E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 800 | 894 | 1.1E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 184 | 267 | 5.2E-13 | - |
| SMART | SM00220 | serkin_6 | 807 | 1073 | 6.4E-56 | IPR000719 |
| SMART | SM00666 | PB1_new | 180 | 267 | 7.6E-29 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 807 | 1077 | 41.233837 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 932 | 944 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 813 | 838 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 997 | 1019 | 1.3E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 926 | 944 | 1.3E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 889 | 902 | 1.3E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1041 | 1063 | 1.3E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 469 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_020271406.1 | probable serine/threonine-protein kinase roco5 isoform X1 [Asparagus officinalis] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EG54 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F19170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology