Basic Information
Locus ID:
AsparagusV1_07.1775.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
mitochondrial
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 61092457 | 61147503 | + | AsparagusV1_07.1775.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 113,444.13 Da | 38.95 | 101.21 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 149 | 208 | 1.8E-8 | IPR001611 |
| Pfam | PF01571 | Aminomethyltransferase folate-binding domain | 729 | 938 | 5.5E-25 | IPR006222 |
| Pfam | PF13855 | Leucine rich repeat | 261 | 304 | 1.9E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 413 | 589 | 3.4E-34 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 52 | 74 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF101790 | Aminomethyltransferase beta-barrel domain | 967 | 1038 | 3.27E-6 | IPR029043 |
| SUPERFAMILY | SSF103025 | Folate-binding domain | 726 | 962 | 2.04E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 79 | 334 | 4.59E-61 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 389 | 587 | 5.8E-56 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 6 | 110 | 3.27E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 340 | 2.4E-98 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 383 | 487 | 1.3E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 488 | 595 | 3.5E-30 | - |
| Gene3D | G3DSA:3.30.1360.120 | Probable tRNA modification gtpase trme; domain 1 | 713 | 1038 | 7.6E-67 | IPR027266 |
| SMART | SM00369 | LRR_typ_2 | 99 | 123 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 147 | 170 | 7.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 243 | 266 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 219 | 54.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 412 | 753 | 4.8E-18 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 267 | 291 | 82.0 | IPR003591 |
| TIGRFAM | TIGR03317 | ygfZ_signature: folate-binding protein YgfZ | 910 | 972 | 2.8E-18 | IPR017703 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 412 | 685 | 27.0009 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 269 | 292 | 7.465533 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 125 | 147 | 7.43473 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 418 | 440 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 531 | 543 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 633 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60990.1 | Glycine cleavage T-protein family. | 0 |
| RefSeq | XP_020274149.1 | putative transferase At1g60990, chloroplastic [Asparagus officinalis] | 0 |
| Q681Y3 | Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g60990 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EEP7 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F17750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064260 |
| Apiaceae | Apium graveolens | 1 | Ag6G01857 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1775.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G24419 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G60990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023478m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03530.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g075200.2N, BniB06g024310.2N, BniB07g046940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0171 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0203 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0867s00003.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.743 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06246, Lb4G23835, Lb8G36509 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.763 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7348 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17671 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5772 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.485 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011484 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8319 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-873, nbisL1-mrna-874 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598691 |
| Solanaceae | Solanum chilense | 1 | SOLCI002907900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008309 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30123_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0744 |