Basic Information
Locus ID:
AsparagusV1_07.1726.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
UBA/TS-N domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 58771954 | 58772127 | + | AsparagusV1_07.1726.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 6,214.87 Da | 72.33 | 82.46 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 15 | 50 | 3.5E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 9 | 55 | 3.48E-13 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 1 | 56 | 1.1E-13 | - |
| SMART | SM00165 | uba_6 | 15 | 52 | 8.8E-11 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 13 | 53 | 14.040914 | IPR015940 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41160.1 | Ubiquitin-associated (UBA) protein. | 0 |
| RefSeq | XP_020275575.1 | LOW QUALITY PROTEIN: rhomboid-like protein 20 [Asparagus officinalis] | 0 |
| Q8RXQ2 | Rhomboid-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=RBL18 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EHT8 | UBA domain-containing protein (Fragment) OS=Asparagus officinalis OX=4686 GN=A4U43_C07F17260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg3799, jg4236 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1726.V1.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G127900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr03G001410 |