Basic Information
Locus ID:
AsparagusV1_07.1656.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 55976379 | 56005609 | - | AsparagusV1_07.1656.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 95,997.57 Da | 53.41 | 77.60 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 185 | 324 | 4.91002E-32 | - |
| CDD | cd00821 | PH | 25 | 124 | 3.69945E-12 | - |
| Pfam | PF00620 | RhoGAP domain | 185 | 329 | 2.3E-32 | IPR000198 |
| Pfam | PF00169 | PH domain | 24 | 128 | 3.6E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 614 | 694 | 4.3E-21 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 185 | 379 | 1.04E-34 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 18 | 135 | 1.1E-17 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 11 | 130 | 2.2E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 153 | 378 | 7.3E-42 | IPR008936 |
| SMART | SM00233 | PH_update | 23 | 131 | 1.8E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 182 | 373 | 7.2E-28 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 176 | 376 | 30.280214 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 22 | 129 | 15.1856 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 867 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 408 | - | - |
| Coils | Coil | Coil | 604 | 638 | - | - |
| Coils | Coil | Coil | 818 | 845 | - | - |
| Coils | Coil | Coil | 663 | 697 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_020276733.1 | rho GTPase-activating protein 7-like isoform X1 [Asparagus officinalis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1ECN1 | Rho GTPase-activating protein 7-like OS=Asparagus officinalis OX=4686 GN=A4U43_C07F16560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology