Basic Information
Locus ID:
AsparagusV1_07.1373.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 44818077 | 44828873 | + | AsparagusV1_07.1373.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 47,416.62 Da | 59.23 | 85.94 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 219 | 267 | 2.0802E-14 | - |
| Pfam | PF12906 | RING-variant domain | 219 | 266 | 1.9E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 270 | 5.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 273 | 2.2E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 218 | 267 | 8.0E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 211 | 273 | 19.539845 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020274766.1 | uncharacterized protein LOC109849355 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1EBX1 | RING-CH-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F13730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology