Basic Information
Locus ID:
AsparagusV1_07.1164.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 35352791 | 35360917 | + | AsparagusV1_07.1164.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 73,545.36 Da | 50.15 | 75.38 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06071 | Protein of unknown function (DUF933) | 516 | 579 | 3.5E-8 | IPR013029 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 177 | 489 | 3.5E-86 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 139 | 522 | 5.28E-125 | IPR011050 |
| SUPERFAMILY | SSF81271 | TGS-like | 516 | 579 | 2.65E-8 | IPR012676 |
| Gene3D | G3DSA:3.10.20.30 | - | 517 | 579 | 4.8E-8 | IPR012675 |
| Gene3D | G3DSA:2.160.20.10 | - | 144 | 512 | 1.1E-111 | IPR012334 |
| SMART | SM00710 | pbh1 | 136 | 158 | 9900.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 412 | 433 | 4800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 383 | 404 | 47.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 303 | 329 | 170.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 353 | 373 | 3700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 445 | 466 | 8700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 330 | 351 | 1200.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 360 | 373 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 114 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_020274586.1 | polygalacturonase At1g48100-like [Asparagus officinalis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EB83 | YchF-GTPase_C domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C07F11640 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology