Basic Information
Locus ID:
AsparagusV1_07.1162.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Protein RRP5 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 35301133 | 35311677 | - | AsparagusV1_07.1162.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 33,375.85 Da | 44.72 | 97.51 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04387 | Protein tyrosine phosphatase-like protein, PTPLA | 217 | 288 | 1.5E-16 | IPR007482 |
| Gene3D | G3DSA:3.10.180.10 | - | 116 | 189 | 9.5E-10 | IPR029068 |
| Gene3D | G3DSA:2.40.50.140 | - | 75 | 115 | 3.2E-7 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10480.2 | Protein-tyrosine phosphatase-like, PTPLA. Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids). | 0 |
| RefSeq | XP_020272381.1 | very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like [Asparagus officinalis] | 0 |
| Q7XSZ4 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1EGC7 | Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Asparagus officinalis OX=4686 GN=A4U43_C07F11620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28772, jg981 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24166 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027189 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12563, Sbi_jg53372 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8555 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010457 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33694, Sgl39006 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000776, gene:ENSEOMG00000002824 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022900, CQ.Regalona.r1.6BG0024210 |
| Apiaceae | Apium graveolens | 1 | Ag3G01657 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703452 |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_05.1363.V1.1, AsparagusV1_05.3558.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G13914, Ftri6G32666 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10480.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014620m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g051430.2N, BniB08g004710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0310 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0339 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0248s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2179 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2700 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007498, Pov_00028766 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27914 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.661, AH02.663, BH02.668, BH02.669, CH02.764, CH02.765 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0009760, gene-QOZ80_1AG0009770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0230910.1, HORVU.MOREX.r3.3HG0230930.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018651, gene-QYE76_048590, gene-QYE76_058390 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G001960, Oco01G001970, Oco02G001950, Oco02G001960 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os01g05694.1, LOC_Os01g05710.1, LOC_Os01g05720.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G063900, gene-BS78_03G064000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205832, Pt_Chr0205833, Pt_Chr0205834, Pt_Chr0601176 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G023470, Chr03G004340 |
| Poaceae | Thinopyrum elongatum | 9 | Tel3E01G136600, Tel3E01G137200, Tel3E01G899100 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC3AG008980, gene_TRIDC3AG075370 ... |
| Poaceae | Triticum aestivum | 17 | TraesCS1D02G051800.1, TraesCS3A02G075100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb124340_P001, Zm00001eb335910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13029, nbis-gene-6947 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9971 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1463, evm.TU.LG12.129 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g28700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1113 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-871 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2365 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.576 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001920 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6142 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1800 |
| Salicaceae | Populus euphratica | 1 | populus_peu23715 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614571, gene-LOC132614748 |
| Solanaceae | Solanum chilense | 2 | SOLCI004953200, SOLCI005252800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002947, gene-LOC107018380 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16418_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0202 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30750.v3.1 |