Basic Information
Locus ID:
AsparagusV1_06.917.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 21640652 | 21646405 | + | AsparagusV1_06.917.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 34,765.96 Da | 47.25 | 90.26 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 51 | 102 | 1.9246E-19 | - |
| Pfam | PF12906 | RING-variant domain | 51 | 101 | 1.5E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 47 | 106 | 2.83E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 114 | 4.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 50 | 102 | 3.6E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 43 | 108 | 21.207649 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| Coils | Coil | Coil | 292 | 306 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020269905.1 | uncharacterized protein LOC109845111 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1EKN0 | RING-CH-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F9170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology