Basic Information
Locus ID:
AsparagusV1_06.494.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 8820141 | 8834884 | - | AsparagusV1_06.494.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 36,722.82 Da | 51.72 | 79.45 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 9.23305E-28 | - |
| Pfam | PF09280 | XPC-binding domain | 218 | 273 | 7.8E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.8E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 165 | 202 | 9.8E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 298 | 334 | 8.5E-11 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 1.24E-20 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 214 | 280 | 1.16E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 283 | 341 | 3.65E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 161 | 210 | 5.57E-11 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.6E-27 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 291 | 338 | 2.4E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 209 | 274 | 1.4E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 157 | 208 | 8.4E-20 | - |
| SMART | SM00165 | uba_6 | 299 | 336 | 4.7E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.1E-18 | IPR000626 |
| SMART | SM00727 | CBM | 216 | 259 | 1.4E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 164 | 204 | 0.0027 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.281326 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 297 | 337 | 13.703554 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 162 | 205 | 12.137243 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 293 | 309 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 310 | 324 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 325 | 340 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 244 | 266 | 1.1E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 124 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020269018.1 | LOW QUALITY PROTEIN: ubiquitin receptor RAD23d-like [Asparagus officinalis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EN01 | Ubiquitin receptor RAD23 OS=Asparagus officinalis OX=4686 GN=A4U43_C06F4940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology