Basic Information
Locus ID:
AsparagusV1_06.39.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 670520 | 682820 | - | AsparagusV1_06.39.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 65,744.07 Da | 41.48 | 93.81 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 555 | 2.38696E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 473 | 512 | 0.0021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 343 | 0.0099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 385 | 0.061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 297 | 0.0053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 555 | 3.0E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 555 | 2.15E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 523 | 581 | 3.9E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 522 | 7.9E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 471 | 513 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 3.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 5.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 7.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 467 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 5.4E-7 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 8.943958 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 299 | 10.442869 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 558 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 365 | 387 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 344 | 10.337415 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 565 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.723007 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 285 | 299 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 372 | 386 | 7.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 285 | 299 | 7.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 543 | 557 | 7.5E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_020270323.1 | WD repeat-containing protein 26-like isoform X1 [Asparagus officinalis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EIF4 | WD repeat-containing protein 26 homolog OS=Asparagus officinalis OX=4686 GN=A4U43_C06F390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology