Basic Information
Locus ID:
AsparagusV1_06.382.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 6336007 | 6345881 | + | AsparagusV1_06.382.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 45,833.87 Da | 45.23 | 70.62 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 5.79943E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 8.2827E-50 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 333 | 1.25578E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 3.1E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 3.1E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 327 | 9.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 338 | 6.38E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 53 | 217 | 3.46E-45 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 1.7E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 236 | 2.6E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 237 | 337 | 9.3E-23 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 260 | 329 | 8.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 3.8E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 4.5E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 140 | 213 | 0.0013 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 260 | 329 | 4.8E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 14.743426 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 17.762232 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 333 | 16.056692 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 255 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_020268947.1 | oligouridylate-binding protein 1-like [Asparagus officinalis] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ELJ3 | Oligouridylate-binding protein 1-like OS=Asparagus officinalis OX=4686 GN=A4U43_C06F3820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology