Basic Information
Locus ID:
AsparagusV1_06.345.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5742876 | 5748559 | - | AsparagusV1_06.345.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 36,688.89 Da | 66.82 | 81.55 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 248 | 290 | 8.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 296 | 7.3E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 211 | 296 | 1.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 249 | 289 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 249 | 290 | 12.445019 | IPR001841 |
| Coils | Coil | Coil | 91 | 111 | - | - |
| Coils | Coil | Coil | 300 | 320 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020269893.1 | E3 ubiquitin-protein ligase AIP2 [Asparagus officinalis] | 0 |
| Q8RXD3 | E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EPR4 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F3450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4501 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2631 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020232 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5053, Sbi_jg6824 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13008 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003846 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00345, Sgl00410, Sgl05402, Sgl05436 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012952, gene:ENSEOMG00000030612 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0014030, CQ.Regalona.r1.3BG0014040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208620 |
| Apiaceae | Apium graveolens | 2 | Ag7G00441, Ag7G00443 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G005160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712582 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.345.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G14110, FtriNA01204 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G20910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014170m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23610.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1767 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1894 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g11200 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0556s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04610 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.715 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013742 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2025, BH03.2380, CH03.2350 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536090, gene-QOZ80_6BG0489370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005359 |
| Poaceae | Oryza coarctata | 2 | Oco17G005540, Oco18G005630 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701965 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G009350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G355200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034840, gene_TRIDC5BG036530 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G216000.1, TraesCS5B02G214500.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb099970_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30741 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30371 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1474 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g27710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.635 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13852 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8891 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.453 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014891 |
| Salicaceae | Populus euphratica | 3 | populus_peu12552, populus_peu38094, populus_peu38224 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635751 |
| Solanaceae | Solanum chilense | 1 | SOLCI004680800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026823 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.2589_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1409 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05110.v3.1 |