Basic Information
Locus ID:
AsparagusV1_06.315.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5324373 | 5325173 | + | AsparagusV1_06.315.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 29,314.20 Da | 57.07 | 76.58 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 92 | 135 | 4.45207E-21 | - |
| Pfam | PF13639 | Ring finger domain | 92 | 135 | 9.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 139 | 1.94E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 140 | 3.0E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 93 | 134 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 93 | 135 | 12.504031 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 224 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_020271318.1 | RING-H2 finger protein ATL3-like [Asparagus officinalis] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EPN5 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F3150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology