Basic Information
Locus ID:
AsparagusV1_06.292.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 4929022 | 4931876 | + | AsparagusV1_06.292.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 65,399.27 Da | 44.16 | 91.39 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 181 | 438 | 1.7E-91 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 25 | 115 | 9.3E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 115 | 6.28E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 15 | 152 | 2.0E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 122 | 0.0014 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 11.853831 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 181 | 462 | 91.971115 | IPR027356 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_020270068.1 | BTB/POZ domain-containing protein At5g03250-like [Asparagus officinalis] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1ELA0 | NPH3 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F2920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology