Basic Information
Locus ID:
AsparagusV1_06.1912.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 75342665 | 75349313 | + | AsparagusV1_06.1912.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 70,080.94 Da | 50.20 | 91.49 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 16 | 121 | 1.09357E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 24 | 113 | 3.5E-10 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 468 | 5.2E-98 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 128 | 3.85E-19 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 148 | 1.3E-14 | IPR011333 |
| SMART | SM00225 | BTB_4 | 25 | 124 | 1.3E-6 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 492 | 97.810287 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 25 | 96 | 12.908613 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 629 | - | - |
| Coils | Coil | Coil | 543 | 570 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_020270302.1 | BTB/POZ domain-containing protein At1g30440-like [Asparagus officinalis] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EQD6 | NPH3 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F19120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology