halophFGD

Basic Information

Locus ID: AsparagusV1_06.1766.V1.1

Species & Taxonomic ID: Asparagus officinalis & 4686

Genome Assembly: GCA_001876935.1

Description: RING-type zinc-finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	67669952	67670464	-	AsparagusV1_06.1766.V1.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.98	17,603.02 Da	68.08	69.06	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	58	106	-	-

KEGG Pathway

KO Term:

K11982 (E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_008797320.1	E3 ubiquitin-protein ligase RZF1-like [Phoenix dactylifera]	0
TrEMBL	A0A5P1EMI6	Vegetative cell wall protein gp1-like OS=Asparagus officinalis OX=4686 GN=A4U43_C06F17660 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15785, jg23176, jg28407, jg31414, jg37675
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11747, gene_1500
Amaranthaceae	Atriplex hortensis	2	Ah005123, Ah015351
Amaranthaceae	Beta vulgaris	1	BVRB_4g074340
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17370, Sbi_jg25355, Sbi_jg62018, Sbi_jg9207
Amaranthaceae	Salicornia europaea	2	Seu_jg19381, Seu_jg633
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011150, GOSA_00015524
Amaranthaceae	Suaeda glauca	4	Sgl24306, Sgl29481, Sgl42900, Sgl47692
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000008230, gene:ENSEOMG00000012169 ... gene:ENSEOMG00000029602, gene:ENSEOMG00000034668, gene:ENSEOMG00000041229
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0002680, CQ.Regalona.r1.4BG0002800 ... CQ.Regalona.r1.8AG0014310, CQ.Regalona.r1.8BG0015700
Anacardiaceae	Pistacia vera	1	pistato.v30093830
Apiaceae	Apium graveolens	4	Ag10G02208, Ag2G00826, Ag3G00810, Ag4G01255
Arecaceae	Cocos nucifera	3	COCNU_04G008850, COCNU_12G004790, COCNU_16G002780
Arecaceae	Phoenix dactylifera	5	gene-LOC103705061, gene-LOC103706291, gene-LOC103711708 ... gene-LOC103712547, gene-LOC103722854
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.1908.V1.1, AsparagusV1_05.57.V1.1 ... AsparagusV1_06.1766.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G13338, Ftri4G32413, Ftri8G00594
Brassicaceae	Arabidopsis thaliana	4	AT1G60360.1, AT2G40830.2, AT3G10815.1, AT3G56580.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10006102m.g.v1.0, Thhalv10016932m.g.v1.0 ... Thhalv10021967m.g.v1.0, Thhalv10025714m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp3g09140.v2.2, Sp4g23160.v2.2, Sp5g05980.v2.2 ... SpUn0008_0020.v2.2, SpUn0123_0010.v2.2
Brassicaceae	Brassica nigra	6	BniB01g029350.2N, BniB01g054190.2N, BniB06g000330.2N ... BniB07g025000.2N, BniB08g026420.2N, BniB08g071170.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0839, Ceq07G1593, Ceq09G1838
Casuarinaceae	Casuarina glauca	3	Cgl04G0948, Cgl07G1709, Cgl09G2014
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g00680, gene.Cymno03g12540
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g00970, gene.Thate05g03950, gene.Thate06g23560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-5242, nbisL1-mrna-5243, nbisL1-mrna-8378 ... nbisL1-mrna-8409, nbisL1-mrna-8410
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2666, evm.TU.LG06.927, evm.TU.LG08.1339
Plantaginaceae	Plantago ovata	4	Pov_00000159, Pov_00000160, Pov_00021656, Pov_00026668
Plumbaginaceae	Limonium bicolor	2	Lb3G15860, Lb5G27727
Poaceae	Echinochloa crus-galli	8	AH02.3586, AH06.752, BH06.798, BH07.3418, CH01.4245 ... CH02.2902, CH06.832, CH07.3492
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0036830, gene-QOZ80_1BG0086860 ... gene-QOZ80_2AG0147020, gene-QOZ80_2BG0202590, gene-QOZ80_3AG0248320, gene-QOZ80_3BG0279920, gene-QOZ80_6AG0513290, gene-QOZ80_6BG0465110
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.3HG0295250.1, HORVU.MOREX.r3.6HG0619330.1 ... HORVU.MOREX.r3.3HG0312030.1.CDS1, HORVU.MOREX.r3.7HG0663560.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_025658, gene-QYE76_027336, gene-QYE76_027338 ... gene-QYE76_055934, gene-QYE76_067846
Poaceae	Oryza coarctata	9	Oco01G022520, Oco02G023190, Oco03G022700, Oco04G023350 ... Oco05G013570, Oco06G012820, Oco09G013030, Oco11G004980, Oco12G005050
Poaceae	Oryza sativa	5	LOC_Os01g58780.1, LOC_Os02g52870.1, LOC_Os03g22830.2 ... LOC_Os05g41520.1, LOC_Os06g10800.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G354100, gene-BS78_03G308000 ... gene-BS78_04G288100, gene-BS78_10G083800
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0404976, Pt_Chr0405014, Pt_Chr0601743, Pt_Chr0605493
Poaceae	Sporobolus alterniflorus	12	Chr01G034690, Chr02G007110, Chr03G018140, Chr04G011410 ... Chr05G026360, Chr06G001350, Chr07G010810, Chr09G019010, Chr11G020420, Chr12G004940, Chr13G003220, Chr15G002690
Poaceae	Thinopyrum elongatum	5	Tel3E01G528800, Tel3E01G695800, Tel5E01G029300 ... Tel6E01G584000, Tel7E01G320500
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG062280, gene_TRIDC3BG069890 ... gene_TRIDC6AG049490, gene_TRIDC6BG057940, gene_TRIDC7AG021130, gene_TRIDC7BG011160
Poaceae	Triticum aestivum	12	TraesCS3A02G330900.1, TraesCS3A02G440000.1.cds1 ... TraesCS3B02G361000.1, TraesCS3B02G474100.1.cds1, TraesCS3D02G324300.1, TraesCS3D02G432800.1.cds1, TraesCS6A02G330700.1, TraesCS6B02G361600.1.cds1, TraesCS6D02G309800.1, TraesCS7A02G169600.1.cds1, TraesCS7B02G074800.1.cds1, TraesCS7D02G170800.1.cds1
Poaceae	Zea mays	4	Zm00001eb193570_P001, Zm00001eb256060_P001 ... Zm00001eb279100_P001, Zm00001eb394660_P001
Poaceae	Zoysia japonica	4	nbis-gene-11680, nbis-gene-1572, nbis-gene-21709 ... nbis-gene-8596
Poaceae	Zoysia macrostachya	4	Zma_g14508, Zma_g17226, Zma_g29320, Zma_g8822
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.1926, evm.TU.LG06.411, evm.TU.LG08.1395 ... evm.TU.LG18.1647, evm.TU.LG20.234, evm.TU.LG22.295
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g30760, gene.Posoc02g33420
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_2_RagTag.1608, evm.TU.Scaffold_7_RagTag.1090 ... evm.TU.Scaffold_7_RagTag.1577, evm.TU.Scaffold_8_RagTag.229
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-10087, nbisL1-mrna-18753, nbisL1-mrna-19891 ... nbisL1-mrna-3715
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-14947, nbisL1-mrna-19385, nbisL1-mrna-5592 ... nbisL1-mrna-8536
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-13084, nbisL1-mrna-13510, nbisL1-mrna-17856 ... nbisL1-mrna-18996
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000002l.170, add.evm.TU.utg000002l.47 ... add.evm.TU.utg000009l.114, add.evm.TU.utg000018l.337
Rhizophoraceae	Kandelia obovata	2	Maker00005537, Maker00011857
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17823, nbisL1-mrna-17970, nbisL1-mrna-20003 ... nbisL1-mrna-22060
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-11376, nbisL1-mrna-12267, nbisL1-mrna-21804 ... nbisL1-mrna-9849
Salicaceae	Populus euphratica	4	populus_peu10767, populus_peu26344, populus_peu30502 ... populus_peu32391
Solanaceae	Lycium barbarum	5	gene-LOC132598712, gene-LOC132605160, gene-LOC132621805 ... gene-LOC132626279, gene-LOC132635409
Solanaceae	Solanum chilense	4	SOLCI002404300, SOLCI002646800, SOLCI006278400 ... SOLCI007512100
Solanaceae	Solanum pennellii	4	gene-LOC107004150, gene-LOC107013159, gene-LOC107026960 ... gene-LOC107029258
Tamaricaceae	Reaumuria soongarica	1	STRG.27995_chr04_-
Tamaricaceae	Tamarix chinensis	3	TC02G2960, TC03G3056, TC09G2496
Zosteraceae	Zostera marina	3	Zosma01g12020.v3.1, Zosma01g12040.v3.1, Zosma01g15280.v3.1