Basic Information
Locus ID:
AsparagusV1_06.169.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the ATG8 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 2756458 | 2758694 | + | AsparagusV1_06.169.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 11,061.44 Da | 36.84 | 67.19 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 14 | 48 | 1.1E-10 | IPR004241 |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like | 49 | 94 | 5.7E-19 | IPR004241 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 94 | 8.27E-29 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 50 | 94 | 1.8E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 49 | 4.7E-17 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04136 (Autophagy - other)
map04136 (Autophagy - other)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04138 (Autophagy - yeast)
map04138 (Autophagy - yeast)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04212 (Longevity regulating pathway - worm)
map04212 (Longevity regulating pathway - worm)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
map04621 (NOD-like receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62040.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_020269065.1 | LOW QUALITY PROTEIN: autophagy-related protein 8C-like [Asparagus officinalis] | 0 |
| M1C146 | Autophagy-related protein 8C-like OS=Solanum tuberosum OX=4113 GN=ATG8CL PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EIR7 | Autophagy-related protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F1690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology