Basic Information
Locus ID:
AsparagusV1_06.1654.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 61725424 | 61818587 | + | AsparagusV1_06.1654.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 362,837.31 Da | 43.72 | 87.94 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2647 | 2751 | 4.74875E-6 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 114 | 8.6E-32 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 578 | 801 | 4.5E-33 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2306 | 2392 | 1.4E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1999 | 2151 | 2.3E-11 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 382 | 1.3E-63 | IPR031646 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2630 | 2752 | 9.99E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2631 | 2770 | 4.6E-5 | IPR035892 |
| SMART | SM00694 | dysfc | 2985 | 3025 | 0.0011 | IPR006614 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2202 | 2230 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_020271051.1 | uncharacterized protein LOC109846239 [Asparagus officinalis] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1ERF3 | Peroxin/Ferlin domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F16540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology