Basic Information
Locus ID:
AsparagusV1_06.1597.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
RdRP
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 59130614 | 59170505 | + | AsparagusV1_06.1597.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.34 | 128,813.86 Da | 41.71 | 84.18 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 6 | 83 | 2.17564E-7 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 375 | 939 | 4.6E-188 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 88 | 8.14E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 96 | 1.1E-7 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 83 | 1.3E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 87 | 11.042404 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_020269097.1 | probable RNA-dependent RNA polymerase 1 [Asparagus officinalis] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EM92 | RNA-dependent RNA polymerase OS=Asparagus officinalis OX=4686 GN=A4U43_C06F15970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology