Basic Information
Locus ID:
AsparagusV1_06.1549.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 53999396 | 54014015 | + | AsparagusV1_06.1549.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 99,388.68 Da | 36.99 | 95.98 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 573 | 848 | 7.87461E-101 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 59 | 0.0021 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 324 | 358 | 3.2E-5 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 568 | 842 | 5.0E-50 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 430 | 1.28E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 546 | 845 | 5.86E-82 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 526 | 645 | 3.0E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 646 | 868 | 8.9E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 319 | 2.2E-67 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 321 | 446 | 7.7E-33 | IPR032675 |
| SMART | SM00220 | serkin_6 | 567 | 853 | 9.0E-46 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 384 | 408 | 7.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 132 | 0.076 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 252 | 275 | 10.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 254 | 275 | 7.00349 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 567 | 849 | 41.163166 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 573 | 595 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 693 | 705 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 463 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_020269221.1 | receptor protein kinase TMK1-like [Asparagus officinalis] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EM53 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C06F15490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology