Basic Information
Locus ID:
AsparagusV1_05.968.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 34038593 | 34047718 | - | AsparagusV1_05.968.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 56,450.07 Da | 47.63 | 72.18 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 456 | 500 | 1.89483E-20 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 458 | 500 | 9.8E-7 | IPR023780 |
| Pfam | PF01426 | BAH domain | 174 | 300 | 4.3E-12 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 348 | 409 | 2.63E-10 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 447 | 501 | 3.67E-9 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 290 | 501 | 3.9E-71 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 110 | 289 | 2.1E-46 | IPR043151 |
| SMART | SM00439 | BAH_4 | 173 | 304 | 6.8E-20 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 457 | 501 | 11.7068 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 173 | 304 | 17.669102 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 480 | 500 | - | IPR023779 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_020266232.1 | uncharacterized protein LOC109841697 [Asparagus officinalis] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1ET48 | Cytosine-specific methyltransferase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F9680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology