Basic Information
Locus ID:
AsparagusV1_05.923.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
domain phosphoinositide-interacting protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 31612792 | 31631173 | + | AsparagusV1_05.923.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.76 | 19,786.28 Da | 34.87 | 80.83 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 77 | 0.0031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 153 | 1.1E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 178 | 1.8E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 33 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 36 | 77 | 0.0094 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_020268246.1 | autophagy-related protein 18a-like [Asparagus officinalis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ER06 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F9230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology