Basic Information
Locus ID:
AsparagusV1_05.87.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1716266 | 1723187 | + | AsparagusV1_05.87.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 45,411.39 Da | 33.67 | 100.86 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 82 | 343 | 2.8E-85 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 81 | 343 | 1.51E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 109 | 407 | 3.3E-87 | IPR027417 |
| SMART | SM00382 | AAA_5 | 132 | 310 | 1.1E-4 | IPR003593 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 110 | 269 | 27.134705 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 274 | 348 | 16.69759 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 289 | 297 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 372 | 389 | 1.5E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 286 | 314 | 1.5E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 240 | 269 | 1.5E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 319 | 348 | 1.5E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 202 | 231 | 1.5E-55 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 168 | 197 | 1.5E-55 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_020267120.1 | DNA repair protein recA homolog 2, mitochondrial isoform X1 [Asparagus officinalis] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1END4 | DNA repair protein recA homolog 2, mitochondrial OS=Asparagus officinalis OX=4686 GN=A4U43_C05F870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology