Basic Information
Locus ID:
AsparagusV1_05.77.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Flowering time control protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1481435 | 1516101 | + | AsparagusV1_05.77.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 114,965.94 Da | 49.06 | 67.38 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 445 | 723 | 3.65686E-60 | - |
| CDD | cd04038 | C2_ArfGAP | 206 | 350 | 5.81629E-77 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 512 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 692 | 723 | 2.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 600 | 638 | 1.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 524 | 555 | 4.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 644 | 680 | 3.7E-4 | IPR001680 |
| Pfam | PF00168 | C2 domain | 208 | 298 | 4.1E-23 | IPR000008 |
| Pfam | PF00400 | WD domain, G-beta repeat | 560 | 591 | 0.0035 | IPR001680 |
| Pfam | PF01412 | Putative GTPase activating protein for Arf | 74 | 137 | 2.7E-7 | IPR001164 |
| SUPERFAMILY | SSF57863 | ArfGap/RecO-like zinc finger | 48 | 137 | 3.14E-15 | IPR037278 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 204 | 298 | 1.79E-28 | IPR035892 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 440 | 723 | 3.43E-70 | IPR036322 |
| Gene3D | G3DSA:1.10.220.150 | Arf GTPase activating protein | 73 | 142 | 4.1E-13 | IPR038508 |
| Gene3D | G3DSA:2.130.10.10 | - | 392 | 593 | 6.8E-34 | IPR015943 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 206 | 372 | 9.2E-28 | IPR035892 |
| Gene3D | G3DSA:2.130.10.10 | - | 594 | 733 | 3.1E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 641 | 681 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 513 | 5.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 555 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 558 | 595 | 1.7 | IPR001680 |
| SMART | SM00239 | C2_3c | 208 | 303 | 2.0E-20 | IPR000008 |
| SMART | SM00320 | WD40_4 | 684 | 724 | 1.8E-6 | IPR001680 |
| SMART | SM00105 | arf_gap_3 | 44 | 144 | 3.7E-6 | IPR001164 |
| SMART | SM00320 | WD40_4 | 427 | 471 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 599 | 638 | 7.7E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 555 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 606 | 647 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 565 | 591 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 190 | 304 | 19.582886 | IPR000008 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 481 | 513 | 9.09833 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 692 | 723 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 564 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 606 | 641 | 10.785595 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 692 | 723 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 648 | 680 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 648 | 680 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 439 | 471 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 481 | 513 | 10.842632 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1023 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1018 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 853 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13480.3 | - | 0 |
| RefSeq | XP_020268609.1 | flowering time control protein FY, partial [Asparagus officinalis] | 0 |
| Q6NLV4 | Flowering time control protein FY OS=Arabidopsis thaliana OX=3702 GN=FY PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1ENC3 | C2 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28976 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17172 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032394 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29958, Sbi_jg43421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004240 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14343, Sgl14344, Sgl19510, Sgl66259, Sgl66263, Sgl70574 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015624, gene:ENSEOMG00000021875 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0004450, CQ.Regalona.r1.2BG0005670 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165980 |
| Apiaceae | Apium graveolens | 1 | Ag1G00190 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008240, COCNU_16G002290 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714650, gene-LOC103722450 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.77.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G16520 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13480.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012890m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30540.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g024850.2N, BniB08g006340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0874 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0886 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0510s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g10270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3166, nbisL1-mrna-4862 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1980 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014814 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02357 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4521, BH02.4571, CH02.4622 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0046570, gene-QOZ80_3BG0295310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0495130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058078 |
| Poaceae | Oryza coarctata | 2 | Oco01G029980, Oco02G031140 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g72220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G401000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403030 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G000200, Chr02G000990, Chr05G033670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G469300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG043980, gene_TRIDC5BG047980 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G293600.2, TraesCS5B02G292800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb140970_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12611, nbis-gene-26152, nbis-gene-26153 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10909, Zma_g8457 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1077, evm.TU.LG25.286 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.55 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7151 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14506 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.346 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009963 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-241 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22077 |
| Salicaceae | Populus euphratica | 2 | populus_peu04256, populus_peu35076 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635775 |
| Solanaceae | Solanum chilense | 1 | SOLCI002121600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028734 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13509 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3886 |
| Zosteraceae | Zostera marina | 1 | Zosma06g29860.v3.1 |