Basic Information
Locus ID:
AsparagusV1_05.676.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Serine threonine-protein kinase HT1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 18521522 | 18522455 | + | AsparagusV1_05.676.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 30,764.69 Da | 46.26 | 72.96 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 113 | 277 | 4.4E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 109 | 277 | 1.04E-46 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 92 | 277 | 1.3E-46 | - |
| SMART | SM00220 | serkin_6 | 108 | 275 | 4.4E-10 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 108 | 277 | 31.043224 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 230 | 242 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 79 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24360.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_020267300.1 | LOW QUALITY PROTEIN: serine/threonine-protein kinase HT1-like [Asparagus officinalis] | 0 |
| Q9ZQ31 | Serine/threonine-protein kinase STY13 OS=Arabidopsis thaliana OX=3702 GN=STY13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EPW6 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F6760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag4G01530 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.676.V1.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38491 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g25810, gene.Posoc06g14830 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014949 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006980 |