Basic Information
Locus ID:
AsparagusV1_05.667.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 18304747 | 18319894 | + | AsparagusV1_05.667.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 46,214.24 Da | 49.45 | 67.45 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 266 | 338 | 4.62509E-36 | - |
| CDD | cd12352 | RRM1_TIA1_like | 61 | 131 | 8.1301E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 145 | 219 | 1.37456E-49 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 146 | 216 | 7.7E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 61 | 127 | 8.0E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 268 | 333 | 5.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 344 | 7.33E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 57 | 225 | 9.51E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 242 | 344 | 9.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 140 | 7.1E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 237 | 1.4E-25 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 145 | 218 | 0.0065 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 145 | 218 | 6.7E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 60 | 129 | 1.3E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 267 | 336 | 1.6E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 59 | 133 | 15.647363 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 266 | 340 | 15.255088 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 144 | 222 | 16.448967 | IPR000504 |
| Coils | Coil | Coil | 5 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_020266510.1 | oligouridylate-binding protein 1B-like isoform X1 [Asparagus officinalis] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EU63 | Oligouridylate-binding protein 1-like OS=Asparagus officinalis OX=4686 GN=A4U43_C05F6670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology