Basic Information
Locus ID:
AsparagusV1_05.61.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1201310 | 1220452 | - | AsparagusV1_05.61.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 96,584.93 Da | 56.91 | 78.83 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 21 | 116 | 3.55579E-11 | - |
| CDD | cd00159 | RhoGAP | 181 | 320 | 4.55348E-33 | - |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 1.0E-31 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 613 | 693 | 3.4E-21 | IPR025757 |
| Pfam | PF00169 | PH domain | 20 | 124 | 3.8E-12 | IPR001849 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 375 | 4.51E-35 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 19 | 123 | 5.48E-17 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 149 | 374 | 4.5E-42 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 16 | 126 | 1.4E-15 | IPR011993 |
| SMART | SM00233 | PH_update | 19 | 127 | 2.2E-15 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 1.7E-28 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 30.571833 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 14.6408 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 421 | - | - |
| Coils | Coil | Coil | 603 | 637 | - | - |
| Coils | Coil | Coil | 662 | 696 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.4 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_020268586.1 | rho GTPase-activating protein 7-like, partial [Asparagus officinalis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1ENB6 | Rho GTPase-activating protein 7-like OS=Asparagus officinalis OX=4686 GN=A4U43_C05F610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology