Basic Information
Locus ID:
AsparagusV1_05.494.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 12274730 | 12277850 | + | AsparagusV1_05.494.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 61,648.86 Da | 51.62 | 83.34 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 357 | 539 | 4.21071E-87 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 402 | 526 | 1.8E-14 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 193 | 304 | 1.6E-20 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 357 | 551 | 1.05E-41 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 191 | 334 | 1.26E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 101 | 192 | 5.44E-10 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 87 | 192 | 1.2E-7 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 350 | 541 | 1.6E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 193 | 344 | 1.6E-40 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 101 | 195 | 2.0E-28 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 191 | 551 | 7.1E-121 | IPR012110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_020268096.1 | LOW QUALITY PROTEIN: pyruvate decarboxylase 2-like [Asparagus officinalis] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1EPG9 | pyruvate decarboxylase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F4940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology