Basic Information
Locus ID:
AsparagusV1_05.427.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 9441251 | 9450943 | - | AsparagusV1_05.427.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 157,046.56 Da | 45.23 | 95.95 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1002 | 1398 | 2.61121E-107 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1048 | 1400 | 1.8E-78 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 16 | 451 | 2.71E-28 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 996 | 1393 | 1.7E-92 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 18 | 453 | 8.9E-44 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 946 | 1175 | 3.7E-38 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1282 | 1398 | 3.0E-33 | - |
| SMART | SM00119 | hect_3 | 1014 | 1400 | 3.9E-88 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1024 | 1400 | 58.90847 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 746 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 735 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_020267901.1 | E3 ubiquitin-protein ligase UPL4-like [Asparagus officinalis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5P1EPV9 | HECT-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F4270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology