Basic Information
Locus ID:
AsparagusV1_05.3582.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 131394212 | 131402505 | - | AsparagusV1_05.3582.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 55,540.40 Da | 40.10 | 108.28 | 0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 369 | 507 | 4.1E-9 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 78 | 244 | 9.9E-32 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 31 | 510 | 6.54E-63 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 41 | 512 | 3.2E-79 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 46 | 505 | 38.409245 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 381 | 396 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020265975.1 | organic cation/carnitine transporter 7 [Asparagus officinalis] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EX07 | MFS domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F35820 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology