Basic Information
Locus ID:
AsparagusV1_05.3558.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 130807266 | 130833089 | - | AsparagusV1_05.3558.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 51,532.10 Da | 37.33 | 90.52 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 146 | 201 | 1.1E-19 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 146 | 202 | 1.12E-22 | IPR011009 |
| Gene3D | G3DSA:2.40.50.140 | - | 233 | 278 | 1.7E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 137 | 223 | 3.5E-23 | - |
| Gene3D | G3DSA:3.10.180.10 | - | 279 | 322 | 3.2E-5 | IPR029068 |
| Gene3D | G3DSA:3.10.180.10 | - | 323 | 367 | 5.9E-9 | IPR029068 |
| SMART | SM00220 | serkin_6 | 74 | 314 | 5.0E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 5 | 315 | 16.018782 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 174 | 186 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00650 (Butanoate metabolism)
map00650 (Butanoate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24400.2 | CBL-interacting protein kinase 8. Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response. | 0 |
| RefSeq | XP_020265949.1 | uncharacterized protein LOC109841404 isoform X4 [Asparagus officinalis] | 0 |
| Q5JLD8 | CBL-interacting protein kinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EXN5 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F35580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28772, jg981 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24166 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027189 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12563, Sbi_jg53372 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8555 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010457 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33694, Sgl39006 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000776, gene:ENSEOMG00000002824 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0022900, CQ.Regalona.r1.6BG0024210 |
| Apiaceae | Apium graveolens | 1 | Ag3G01657 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703452 |
| Asparagaceae | Asparagus officinalis | 6 | AsparagusV1_05.1363.V1.1, AsparagusV1_05.3558.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G13914, Ftri6G32666 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10480.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014620m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g051430.2N, BniB08g004710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0310 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0339 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g00140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0248s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2179 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2700 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007498, Pov_00028766 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27914 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.661, AH02.663, BH02.668, BH02.669, CH02.764, CH02.765 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0009760, gene-QOZ80_1AG0009770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0230910.1, HORVU.MOREX.r3.3HG0230930.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018651, gene-QYE76_048590, gene-QYE76_058390 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G001960, Oco01G001970, Oco02G001950, Oco02G001960 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os01g05694.1, LOC_Os01g05710.1, LOC_Os01g05720.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G063900, gene-BS78_03G064000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205832, Pt_Chr0205833, Pt_Chr0205834, Pt_Chr0601176 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G023470, Chr03G004340 |
| Poaceae | Thinopyrum elongatum | 9 | Tel3E01G136600, Tel3E01G137200, Tel3E01G899100 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC3AG008980, gene_TRIDC3AG075370 ... |
| Poaceae | Triticum aestivum | 17 | TraesCS1D02G051800.1, TraesCS3A02G075100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb124340_P001, Zm00001eb335910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13029, nbis-gene-6947 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9971 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1463, evm.TU.LG12.129 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g28700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1113 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-871 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2365 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.576 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001920 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6142 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1800 |
| Salicaceae | Populus euphratica | 1 | populus_peu23715 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614571, gene-LOC132614748 |
| Solanaceae | Solanum chilense | 2 | SOLCI004953200, SOLCI005252800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002947, gene-LOC107018380 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16418_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0202 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30750.v3.1 |