Basic Information
Locus ID:
AsparagusV1_05.3448.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 129025094 | 129038788 | - | AsparagusV1_05.3448.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 89,585.51 Da | 52.90 | 73.49 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 128 | 435 | 6.94478E-162 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 129 | 434 | 5.9E-44 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 125 | 449 | 5.89E-87 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 125 | 445 | 3.4E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 129 | 437 | 48.285957 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 130 | 145 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 742 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 817 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 674 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 652 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_020267050.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Asparagus officinalis] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1EYH6 | USP domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F34480 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology