Basic Information
Locus ID:
AsparagusV1_05.3432.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 128616858 | 128627151 | - | AsparagusV1_05.3432.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 39,430.55 Da | 48.97 | 75.55 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.2392E-30 | - |
| Pfam | PF09280 | XPC-binding domain | 241 | 296 | 5.0E-23 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.8E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 148 | 185 | 1.9E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 321 | 357 | 1.5E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 143 | 195 | 1.18E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 237 | 304 | 1.03E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 8.33E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 303 | 363 | 1.6E-14 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.1E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 313 | 360 | 4.6E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 140 | 190 | 3.4E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 231 | 297 | 2.9E-27 | IPR036353 |
| SMART | SM00727 | CBM | 237 | 282 | 2.8E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.3E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 322 | 359 | 2.4E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 147 | 187 | 4.2E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 365 | 5.7E-124 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.824041 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 146 | 188 | 12.426409 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 320 | 360 | 14.763827 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 348 | 363 | 2.0E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 316 | 332 | 2.0E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 267 | 289 | 2.0E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 347 | 2.0E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 132 | - | - |
| Coils | Coil | Coil | 268 | 288 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020265804.1 | ubiquitin receptor RAD23b [Asparagus officinalis] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1EZB4 | Ubiquitin receptor RAD23 OS=Asparagus officinalis OX=4686 GN=A4U43_C05F34320 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology