Basic Information
Locus ID:
AsparagusV1_05.3373.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
CIPK6
Description:
Non-specific serine threonine protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 127615971 | 127617170 | - | AsparagusV1_05.3373.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 29,394.17 Da | 41.13 | 97.92 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 107 | 202 | 6.2E-31 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 29 | 203 | 2.16E-62 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 13 | 107 | 1.7E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 108 | 230 | 1.1E-42 | - |
| SMART | SM00220 | serkin_6 | 18 | 258 | 3.7E-52 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 17 | 269 | 29.205803 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 109 | 121 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 246 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30960.1 | SOS3-interacting protein 3. Encodes CBL-interacting protein kinase 6 (CIPK6). Required for development and salt tolerance. | 0 |
| RefSeq | XP_020267032.1 | LOW QUALITY PROTEIN: CBL-interacting protein kinase 6-like [Asparagus officinalis] | 0 |
| O65554 | CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CIPK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EWG5 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F33730 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3373.V1.1 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G36713 |