Basic Information
Locus ID:
AsparagusV1_05.3276.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 125264691 | 125278672 | + | AsparagusV1_05.3276.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 115,641.25 Da | 37.05 | 80.70 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 496 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 926 | 958 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 847 | 1023 | 4.03E-25 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 357 | 672 | 2.27E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 327 | 553 | 4.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 747 | 1004 | 3.8E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 554 | 700 | 4.4E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 589 | 629 | 6.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 874 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 920 | 959 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 496 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 673 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 543 | 586 | 73.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 540 | 0.0018 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.8E-14 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 877 | 917 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 927 | 958 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.681639 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 505 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 927 | 958 | 9.836508 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.24683 | IPR006594 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_020265606.1 | topless-related protein 1-like isoform X1 [Asparagus officinalis] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1EWX1 | TOPLESS OS=Asparagus officinalis OX=4686 GN=A4U43_C05F32760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology