Basic Information
Locus ID:
AsparagusV1_05.3235.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 124150660 | 124169089 | + | AsparagusV1_05.3235.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 87,362.55 Da | 40.88 | 89.80 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 351 | 649 | 7.78118E-162 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 37 | 334 | 1.75523E-156 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 60 | 329 | 6.6E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 356 | 645 | 6.2E-27 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 350 | 650 | 1.1E-45 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 35 | 334 | 2.88E-39 | IPR017946 |
| SUPERFAMILY | SSF103511 | Chlorophyll a-b binding protein | 754 | 799 | 2.09E-7 | - |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 35 | 335 | 2.5E-35 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 349 | 651 | 4.0E-50 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 37 | 335 | 24.260487 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 351 | 650 | 35.125183 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58050.1 | SHV3-like 4. | 0 |
| RefSeq | XP_020265565.1 | glycerophosphodiester phosphodiesterase GDPDL6-like [Asparagus officinalis] | 0 |
| Q9FGT9 | Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana OX=3702 GN=GDPDL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EWT0 | glycerophosphodiester phosphodiesterase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F32350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology