Basic Information
Locus ID:
AsparagusV1_05.3193.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 123005761 | 123006468 | + | AsparagusV1_05.3193.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 26,490.88 Da | 52.37 | 72.68 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 187 | 224 | 6.95686E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 186 | 230 | 2.8E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 232 | 9.77E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 235 | 9.6E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 224 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 225 | 11.382803 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 202 | 211 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044495859.1 | uncharacterized protein LOC123218463 [Mangifera indica] | 0 |
| TrEMBL | A0A5P1EXS7 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F31930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology