Basic Information
Locus ID:
AsparagusV1_05.3182.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 122717266 | 122724807 | + | AsparagusV1_05.3182.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 24,509.58 Da | 48.53 | 52.34 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 22 | 156 | 2.44311E-58 | - |
| Pfam | PF00628 | PHD-finger | 140 | 188 | 2.8E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 23 | 135 | 1.5E-24 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 130 | 189 | 2.02E-19 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 132 | 9.6E-32 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 198 | 1.3E-20 | IPR013083 |
| SMART | SM00439 | BAH_4 | 21 | 136 | 3.7E-42 | IPR001025 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 1.0E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.2675 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 136 | 23.838444 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 214 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_020265511.1 | chromatin remodeling protein EBS-like [Asparagus officinalis] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1EWG1 | Chromatin remodeling protein EBS-like OS=Asparagus officinalis OX=4686 GN=A4U43_C05F31820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology