Basic Information
Locus ID:
AsparagusV1_05.3049.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 119372841 | 119384500 | + | AsparagusV1_05.3049.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 82,592.96 Da | 41.09 | 87.66 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 44 | 342 | 5.57188E-160 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 359 | 659 | 6.6617E-153 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 79 | 337 | 8.9E-6 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 364 | 655 | 1.5E-37 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 358 | 660 | 3.14E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 43 | 342 | 4.19E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 43 | 343 | 1.7E-32 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 357 | 659 | 1.0E-49 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 359 | 660 | 33.37936 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 44 | 343 | 32.258785 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_020265358.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Asparagus officinalis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5P1EW30 | glycerophosphodiester phosphodiesterase OS=Asparagus officinalis OX=4686 GN=A4U43_C05F30490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology