HalophFGD

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Basic Information
Locus ID: AsparagusV1_05.3047.V1.1
Species & Taxonomic ID: Asparagus officinalis & 4686
Genome Assembly: GCA_001876935.1
Description: Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 119302913 119304330 - AsparagusV1_05.3047.V1.1
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.48 16,332.42 Da 39.66 68.86 -0.50
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00121 MATH 48 128 1.71594E-27 IPR002083
Pfam PF00917 MATH domain 53 126 6.2E-11 IPR002083
SUPERFAMILY SSF49599 TRAF domain-like 45 129 1.21E-24 -
Gene3D G3DSA:2.60.210.10 Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 135 1.3E-26 IPR008974
SMART SM00061 math_3 48 139 4.8E-9 IPR002083
ProSiteProfiles PS50144 MATH/TRAF domain profile. 46 140 22.641058 IPR002083
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K11838 (ubiquitin carboxyl-terminal hydrolase 7 [EC:3.4.19.12])
Pathway:
ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G11910.2 ubiquitin-specific protease 13. 0
RefSeq XP_020276593.1 ubiquitin carboxyl-terminal hydrolase 12-like [Asparagus officinalis] 0
Swiss-Prot Q84WU2 Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 0
TrEMBL A0A5P1F120 MATH domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F30470 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Chenopodium album 2 gene:ENSEOMG00000020776, gene:ENSEOMG00000042009
Anacardiaceae Pistacia vera 2 pistato.v30053150, pistato.v30053760
Asparagaceae Asparagus officinalis 3 AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ...
AsparagusV1_09.696.V1.1
Brassicaceae Arabidopsis thaliana 38 AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ...
AT2G01790.1, AT2G05400.1, AT2G05410.1, AT2G05420.1, AT2G05430.1, AT2G42460.1, AT2G42470.1, AT2G42480.1, AT3G27040.1, AT3G29580.1, AT3G44790.1, AT3G44800.1, AT3G44805.1, AT3G58200.1, AT3G58210.1, AT3G58220.2, AT3G58230.1, AT3G58240.1, AT3G58250.1, AT3G58260.1, AT3G58270.1, AT3G58280.1, AT3G58290.1, AT3G58320.1, AT3G58330.1, AT3G58340.1, AT3G58350.1, AT3G58360.1, AT3G58370.1, AT3G58380.1, AT3G58400.1, AT3G58410.1, AT3G58430.1, AT3G58440.1
Brassicaceae Eutrema salsugineum 38 Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ...
Thhalv10006427m.g.v1.0, Thhalv10006437m.g.v1.0, Thhalv10006449m.g.v1.0, Thhalv10006467m.g.v1.0, Thhalv10006470m.g.v1.0, Thhalv10006486m.g.v1.0, Thhalv10008254m.g.v1.0, Thhalv10010958m.g.v1.0, Thhalv10011795m.g.v1.0, Thhalv10011971m.g.v1.0, Thhalv10011981m.g.v1.0, Thhalv10011998m.g.v1.0, Thhalv10012015m.g.v1.0, Thhalv10012031m.g.v1.0, Thhalv10012069m.g.v1.0, Thhalv10012071m.g.v1.0, Thhalv10012142m.g.v1.0, Thhalv10012179m.g.v1.0, Thhalv10016883m.g.v1.0, Thhalv10017071m.g.v1.0, Thhalv10017566m.g.v1.0, Thhalv10023572m.g.v1.0, Thhalv10023616m.g.v1.0, Thhalv10023897m.g.v1.0, Thhalv10023954m.g.v1.0, Thhalv10023996m.g.v1.0, Thhalv10024005m.g.v1.0, Thhalv10024153m.g.v1.0, Thhalv10026867m.g.v1.0, Thhalv10028053m.g.v1.0, Thhalv10028058m.g.v1.0, Thhalv10028109m.g.v1.0, Thhalv10028307m.g.v1.0, Thhalv10028318m.g.v1.0, Thhalv10029184m.g.v1.0, Thhalv10029219m.g.v1.0
Brassicaceae Schrenkiella parvula 18 Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ...
Sp4g24600.v2.2, Sp4g24610.v2.2, Sp5g04440.v2.2, Sp5g04450.v2.2, Sp5g04453.v2.2, Sp5g04457.v2.2, Sp5g04460.v2.2, Sp5g04480.v2.2, Sp5g04500.v2.2, Sp5g04510.v2.2, Sp5g21580.v2.2, Sp6g09200.v2.2, Sp6g09210.v2.2, Sp7g05400.v2.2, SpUn0053_0040.v2.2
Brassicaceae Brassica nigra 59 BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ...
BniB01g003450.2N, BniB01g025850.2N, BniB02g000230.2N, BniB02g001350.2N, BniB02g040450.2N, BniB02g049390.2N, BniB02g051720.2N, BniB03g001240.2N, BniB03g010160.2N, BniB03g011950.2N, BniB03g051100.2N, BniB03g052390.2N, BniB03g055960.2N, BniB04g020230.2N, BniB04g020250.2N, BniB04g020290.2N, BniB04g020300.2N, BniB04g020330.2N, BniB06g001540.2N, BniB06g054900.2N, BniB06g054910.2N, BniB06g054920.2N, BniB06g054930.2N, BniB06g054940.2N, BniB06g054960.2N, BniB06g054970.2N, BniB06g054980.2N, BniB06g054990.2N, BniB06g055000.2N, BniB06g055010.2N, BniB06g055020.2N, BniB06g055030.2N, BniB06g055040.2N, BniB06g055050.2N, BniB06g055060.2N, BniB06g055080.2N, BniB06g055090.2N, BniB06g055100.2N, BniB06g055120.2N, BniB06g055130.2N, BniB06g055140.2N, BniB06g055150.2N, BniB06g063480.2N, BniB06g063490.2N, BniB06g063500.2N, BniB06g063510.2N, BniB06g063530.2N, BniB06g063540.2N, BniB07g008670.2N, BniB07g045970.2N, BniB07g046280.2N, BniB07g046490.2N, BniB08g027490.2N, BniB08g072890.2N, BniB08g072950.2N, BniB08g073000.2N
Casuarinaceae Casuarina glauca 1 Cgl05G1118
Plantaginaceae Plantago ovata 1 Pov_00021253
Poaceae Zoysia japonica 1 nbis-gene-36802
Salicaceae Populus euphratica 1 populus_peu12364
Solanaceae Solanum pennellii 1 gene-LOC107019779
Zosteraceae Zostera marina 6 Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ...
Zosma03g10120.v3.1, Zosma05g15530.v3.1, Zosma05g17230.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.