Basic Information
Locus ID:
AsparagusV1_05.3045.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the phosphohexose mutase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 119266973 | 119268246 | + | AsparagusV1_05.3045.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 11,999.61 Da | 44.16 | 86.60 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 44 | 74 | 2.8E-8 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 44 | 77 | 2.94E-9 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 37 | 77 | 3.3E-15 | - |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 46 | 77 | 11.125165 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 50 | 64 | 4.9E-8 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 65 | 80 | 4.9E-8 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18070.1 | phosphoglucosamine mutase-related. encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). | 0 |
| RefSeq | XP_022878401.1 | phosphoacetylglucosamine mutase-like isoform X3 [Olea europaea var. sylvestris] | 0 |
| Q6ZDQ1 | Phosphoacetylglucosamine mutase OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0195400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1EZY0 | Ubiquitin receptor RAD23 OS=Asparagus officinalis OX=4686 GN=A4U43_C05F30450 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2757.V1.1, AsparagusV1_05.3045.V1.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G018750 |