Basic Information
Locus ID:
AsparagusV1_05.2923.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 115765020 | 115766102 | + | AsparagusV1_05.2923.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 41,226.09 Da | 52.40 | 87.78 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 259 | 350 | 3.5E-33 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 85 | 114 | 0.0015 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 157 | 179 | 0.6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 58 | 83 | 0.015 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 55 | 234 | 2.2E-31 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 85 | 117 | 4.1E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 82 | 116 | 10.764054 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_020265208.1 | pentatricopeptide repeat-containing protein At2g15690-like [Asparagus officinalis] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EVF3 | DYW_deaminase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F29230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology