Basic Information
Locus ID:
AsparagusV1_05.2729.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 110406530 | 110417313 | - | AsparagusV1_05.2729.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 109,208.06 Da | 47.85 | 74.15 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 748 | 781 | 0.068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 661 | 970 | 1.83E-45 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 268 | 488 | 3.08E-13 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 632 | 973 | 1.8E-121 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 266 | 498 | 2.5E-17 | - |
| SMART | SM00320 | WD40_4 | 741 | 781 | 7.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 784 | 823 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 876 | 915 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 865 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 688 | 0.65 | IPR001680 |
| SMART | SM00320 | WD40_4 | 929 | 971 | 200.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 748 | 790 | 9.572741 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 834 | 867 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 834 | 867 | 8.913786 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 852 | 866 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 251 | - | - |
| Coils | Coil | Coil | 524 | 551 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_020264985.1 | protein SPA1-RELATED 2-like [Asparagus officinalis] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EZD3 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C05F27290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology