Basic Information
Locus ID:
AsparagusV1_05.2606.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
ATP-dependent RNA
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 107002050 | 107012281 | + | AsparagusV1_05.2606.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 64,771.54 Da | 42.14 | 88.35 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 353 | 482 | 2.29814E-63 | - |
| CDD | cd00201 | WW | 21 | 51 | 3.1643E-5 | IPR001202 |
| Pfam | PF00397 | WW domain | 20 | 50 | 1.2E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 158 | 328 | 2.0E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 365 | 473 | 6.7E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 53 | 1.05E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 206 | 491 | 1.19E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 111 | 343 | 7.2E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 344 | 514 | 6.0E-60 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 10 | 58 | 1.1E-6 | - |
| SMART | SM00487 | ultradead3 | 153 | 356 | 2.5E-64 | IPR014001 |
| SMART | SM00490 | helicmild6 | 393 | 473 | 9.8E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 19 | 52 | 2.7E-6 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 165 | 339 | 30.427567 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 11.0732 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 368 | 512 | 26.208977 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 134 | 162 | 10.86482 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 285 | 293 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_020264830.1 | DEAD-box ATP-dependent RNA helicase 14-like [Asparagus officinalis] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1EV84 | DEAD-box ATP-dependent RNA helicase 14 OS=Asparagus officinalis OX=4686 GN=A4U43_C05F26060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology