Basic Information
Locus ID:
AsparagusV1_05.2574.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 106068200 | 106073891 | - | AsparagusV1_05.2574.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 34,534.23 Da | 41.84 | 79.20 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.73564E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 9.6E-16 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 248 | 303 | 2.6E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 154 | 192 | 1.5E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 151 | 202 | 6.38E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 5.07E-20 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 245 | 310 | 1.83E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 240 | 304 | 4.6E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.8E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 147 | 198 | 3.5E-21 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.9E-20 | IPR000626 |
| SMART | SM00727 | CBM | 246 | 289 | 1.0E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 154 | 194 | 2.1E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 313 | 1.1E-92 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 152 | 195 | 12.185437 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.061903 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 220 | - | - |
| Coils | Coil | Coil | 275 | 295 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020266789.1 | ubiquitin receptor RAD23b-like [Asparagus officinalis] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1EUM7 | DNA repair protein RAD23 OS=Asparagus officinalis OX=4686 GN=A4U43_C05F25740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology